6R2W
Crystal structure of the super-active FVIIa variant VYT in complex with tissue factor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-03-06 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.310, 80.040, 123.380 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.580 - 1.250 |
R-factor | 0.1714 |
Rwork | 0.170 |
R-free | 0.19380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dan |
Data reduction software | XDS (March 30, 2013) |
Data scaling software | XSCALE (July 4, 2012 BUILT=20130706) |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.580 | 36.580 | 1.300 |
High resolution limit [Å] | 1.250 | 10.000 | 1.250 |
Rmerge | 0.098 | 0.027 | 3.542 |
Rmeas | 0.105 | 0.029 | 4.135 |
Total number of observations | 1469961 | ||
Number of reflections | 190625 | 442 | 20346 |
<I/σ(I)> | 12.26 | 80.35 | 0.44 |
Completeness [%] | 97.8 | 97.1 | 95.2 |
Redundancy | 7.711 | 13.197 | 3.721 |
CC(1/2) | 0.999 | 1.000 | 0.136 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 295 | 0.1 M sodium citrate, pH 5.6, 15.6 % (w/v) PEG 3350, 12 % (v/v) 1-Propanol |