6R0X
The extracellular domain of G6b-B in complex with Fab fragment and DP12 heparin oligosaccharide.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-03 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97624 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 183.800, 72.340, 131.042 |
Unit cell angles | 90.00, 124.52, 90.00 |
Refinement procedure
Resolution | 63.100 - 3.130 |
R-factor | 0.232 |
Rwork | 0.230 |
R-free | 0.26600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4k2u |
Data reduction software | XDS (Jan 26, 2018) |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 65.270 | 65.270 | 3.300 |
High resolution limit [Å] | 3.130 | 9.910 | 3.130 |
Rmerge | 0.159 | 0.037 | 1.214 |
Rmeas | 0.193 | 0.046 | 1.469 |
Rpim | 0.109 | 0.026 | 0.817 |
Number of reflections | 24543 | 783 | 3609 |
<I/σ(I)> | 4 | ||
Completeness [%] | 97.3 | 91.9 | 98.4 |
Redundancy | 3 | 2.8 | 3.1 |
CC(1/2) | 0.990 | 0.995 | 0.426 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 293 | 50 mM MES pH6.2, 10% PEG 550MME, 5% v/v glycerol and 50 mM CaCl2 |