6QGU
Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-1361
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97622 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 115.467, 114.814, 68.314 |
Unit cell angles | 90.00, 108.23, 90.00 |
Refinement procedure
Resolution | 57.400 - 1.770 |
R-factor | 0.16124 |
Rwork | 0.159 |
R-free | 0.19521 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4i15 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.572 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.400 | 1.800 |
High resolution limit [Å] | 1.770 | 1.770 |
Rmerge | 0.055 | 0.615 |
Rmeas | 0.066 | 0.734 |
Rpim | 0.035 | 0.397 |
Number of reflections | 80974 | 4092 |
<I/σ(I)> | 12.1 | 2.2 |
Completeness [%] | 98.6 | 99.3 |
Redundancy | 3.4 | 3.3 |
CC(1/2) | 0.999 | 0.741 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 20% PEG 3350, 0.4 M sodium formate, 0.3 guanidine, 0.1 M MES pH 6.5 |