6PIB
Structure of the Klebsiella pneumoniae LpxH-AZ1 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-24 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 106.750, 106.750, 52.970 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.960 - 2.260 |
R-factor | 0.1979 |
Rwork | 0.196 |
R-free | 0.23940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k8k |
RMSD bond length | 0.001 |
RMSD bond angle | 0.403 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.960 | 2.340 |
High resolution limit [Å] | 2.260 | 2.260 |
Number of reflections | 16565 | 1646 |
<I/σ(I)> | 20.32 | |
Completeness [%] | 99.9 | |
Redundancy | 9.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 10 mM MES, pH 6.0, 100 mM NaCl, 0.5 mM DTT, 2.5% glycerol, 0.75% DMSO 25 mM sodium chloride, 10 mM magnesium chloride hexahydrate, 50 mM sodium citrate, pH 6.0, and 11% PEG 400. |