6PHY
SpAga D472N structure in complex alpha 1,3 galactobiose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-002 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-28 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5419 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 90.958, 127.209, 152.136 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.820 - 2.000 |
R-factor | 0.1754 |
Rwork | 0.173 |
R-free | 0.21570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4phu |
RMSD bond length | 0.006 |
RMSD bond angle | 1.329 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.030 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.072 | 0.260 |
Rpim | 0.034 | 0.186 |
Number of reflections | 58794 | 3818 |
<I/σ(I)> | 18.3 | 2.2 |
Completeness [%] | 98.3 | 87.2 |
Redundancy | 4.1 | 2.2 |
CC(1/2) | 0.997 | 0.920 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 291 | 0.1 M sodium acetate:acetic acid, 0.7-1.0 M ammonium tartrate dibasic |