6PDP
Human PIM1 bound to benzothiophene inhibitor 379
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-18 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 65 |
Unit cell lengths | 94.140, 94.140, 80.131 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 81.530 - 2.500 |
R-factor | 0.1951 |
Rwork | 0.193 |
R-free | 0.22970 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.975 |
Data reduction software | XDS (20190315) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 81.530 | 2.600 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.145 | 1.412 |
Rmeas | 0.151 | 1.470 |
Rpim | 0.042 | 0.408 |
Total number of observations | 179169 | 20543 |
Number of reflections | 14135 | 1594 |
<I/σ(I)> | 10.6 | 2 |
Completeness [%] | 99.9 | 99.2 |
Redundancy | 12.7 | 12.9 |
CC(1/2) | 0.999 | 0.916 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 25% PEG3350, 0.1 M TRIS pH 8.5, 0.2 M lithium sulphate |