6PDI
Human PIM1 bound to benzothiophene inhibitor 224
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-28 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 65 |
Unit cell lengths | 96.961, 96.961, 80.065 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.480 - 1.850 |
R-factor | 0.1631 |
Rwork | 0.161 |
R-free | 0.19310 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.322 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.480 | 1.890 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.056 | 2.859 |
Rmeas | 0.058 | 2.954 |
Rpim | 0.013 | 0.740 |
Total number of observations | 729295 | 35958 |
Number of reflections | 36592 | 2270 |
<I/σ(I)> | 25.7 | 1.2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 19.9 | 15.8 |
CC(1/2) | 1.000 | 0.710 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 20% PEG6000, 0.1M TRIS pH7.5, 0.1M magnesium chloride, 10% ethylene glycol |