Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6PDI

Human PIM1 bound to benzothiophene inhibitor 224

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2019-02-28
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.9762
Spacegroup nameP 65
Unit cell lengths96.961, 96.961, 80.065
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.480 - 1.850
R-factor0.1631
Rwork0.161
R-free0.19310
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle1.322
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.4801.890
High resolution limit [Å]1.8501.850
Rmerge0.0562.859
Rmeas0.0582.954
Rpim0.0130.740
Total number of observations72929535958
Number of reflections365922270
<I/σ(I)>25.71.2
Completeness [%]100.0100
Redundancy19.915.8
CC(1/2)1.0000.710
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.529320% PEG6000, 0.1M TRIS pH7.5, 0.1M magnesium chloride, 10% ethylene glycol

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon