6P8B
E.coli LpxD in complex with peptide FITC-RJPXD33
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-10-30 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9774 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 97.335, 97.335, 216.744 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 78.562 - 2.000 |
R-factor | 0.1784 |
Rwork | 0.177 |
R-free | 0.21050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3eh0 |
Data reduction software | XDS |
Data scaling software | SCALA (0.7.2) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3211) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 84.290 | 84.290 | 2.040 |
High resolution limit [Å] | 2.000 | 10.390 | 2.000 |
Rmerge | 0.109 | 0.015 | 1.719 |
Rmeas | 0.117 | 0.016 | 1.848 |
Rpim | 0.043 | 0.006 | 0.674 |
Total number of observations | 593868 | 4310 | 32608 |
Number of reflections | 81230 | 691 | 4398 |
<I/σ(I)> | 13.7 | 62.7 | 1.2 |
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 7.3 | 6.2 | 7.4 |
CC(1/2) | 0.999 | 1.000 | 0.468 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 0.2M Mg Formate, 20% PEG3350 |