6NU1
Crystal Structure of Human PKM2 in Complex with L-cysteine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-03-29 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9786 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 81.829, 155.918, 94.136 |
Unit cell angles | 90.00, 103.51, 90.00 |
Refinement procedure
Resolution | 24.700 - 2.250 |
R-factor | 0.193 |
Rwork | 0.191 |
R-free | 0.23520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4b2d 3srh |
RMSD bond length | 0.003 |
RMSD bond angle | 0.602 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.15.2_3472: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.700 | 2.370 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.087 | 0.465 |
Rmeas | 0.127 | 0.619 |
Rpim | 0.067 | 0.319 |
Number of reflections | 106086 | 15672 |
<I/σ(I)> | 10.2 | 3.5 |
Completeness [%] | 97.7 | 99.2 |
Redundancy | 3.7 | 3.7 |
CC(1/2) | 0.993 | 0.768 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.2 M SODIUM THIOCYANATE, 100 mM BIS-TRIS PROPANE, 16-20% PEG 3350, 0.2 M NDSB-221 |