6NMW
Crystal structure of the human Lyn SH3 domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 105 |
Detector technology | PIXEL |
Collection date | 2018-07-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97945 |
Spacegroup name | P 61 |
Unit cell lengths | 46.722, 46.722, 55.696 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 32.736 - 1.199 |
R-factor | 0.173 |
Rwork | 0.172 |
R-free | 0.18270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2iim |
RMSD bond length | 0.014 |
RMSD bond angle | 1.602 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.220 |
High resolution limit [Å] | 1.199 | 1.200 |
Rpim | 0.012 | 0.171 |
Number of reflections | 18850 | 12664 |
<I/σ(I)> | 3.55 | |
Completeness [%] | 87.1 | 81.8 |
Redundancy | 5.7 | |
CC(1/2) | 0.994 | 0.923 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.1 M Na citrate, 3.2 M NaCl |