6MR8
D276G DNA polymerase beta substrate complex with templating adenine and incoming Fapy-dGTP analog
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-09 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 55.015, 80.282, 55.564 |
Unit cell angles | 90.00, 110.46, 90.00 |
Refinement procedure
Resolution | 24.795 - 1.897 |
R-factor | 0.1985 |
Rwork | 0.196 |
R-free | 0.23870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3isb |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 1.930 |
High resolution limit [Å] | 1.897 | 5.140 | 1.900 |
Rmerge | 0.076 | 0.062 | 0.831 |
Rmeas | 0.085 | 0.070 | |
Rpim | 0.039 | 0.033 | 0.605 |
Number of reflections | 65523 | 1842 | 1665 |
<I/σ(I)> | 10 | ||
Completeness [%] | 98.8 | 99.9 | 94.6 |
Redundancy | 4.3 | 4.5 | 2.5 |
CC(1/2) | 0.991 | 0.662 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 292 | 50 mM imidazole, pH 8.0, 18% PEG3350 and 350 mM sodium acetate |