6MLB
Crystal structure of the holo retinal-bound domain-swapped dimer Q108K:K40L:T51F mutant of human cellular retinol binding protein II
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-05 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.97856 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 36.476, 63.282, 117.782 |
Unit cell angles | 90.00, 95.94, 90.00 |
Refinement procedure
Resolution | 33.685 - 2.150 |
R-factor | 0.2316 |
Rwork | 0.228 |
R-free | 0.30240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2rct |
RMSD bond length | 0.002 |
RMSD bond angle | 0.546 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.685 | 2.227 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.100 | 0.840 |
Rmeas | 0.112 | |
Rpim | 0.348 | |
Number of reflections | 28616 | 2760 |
<I/σ(I)> | 32.2 | |
Completeness [%] | 98.0 | 96.6 |
Redundancy | 7.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | PEG 4000, ammonium acetate, sodium acetate |