6JOI
Crystal structure of PDGFRA T674I in complex with crenolanib by co-crystallization
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-15 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97776 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.757, 73.992, 103.706 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.022 - 3.100 |
R-factor | 0.2235 |
Rwork | 0.223 |
R-free | 0.24380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k5x |
RMSD bond length | 0.013 |
RMSD bond angle | 1.502 |
Data reduction software | DENZO |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX ((dev_2400: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.340 |
High resolution limit [Å] | 3.100 | 3.100 |
Rpim | 0.067 | |
Number of reflections | 7841 | |
<I/σ(I)> | 13 | |
Completeness [%] | 98.7 | |
Redundancy | 6.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1M NaCl, 0.1M Tris pH 8.0, 15% PEG 4000 |