6JD8
Structure of a proline specific mutant of human cathepsin L
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM14 |
Synchrotron site | ESRF |
Beamline | BM14 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-21 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 42.220, 67.584, 103.239 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.561 - 1.457 |
R-factor | 0.1934 |
Rwork | 0.192 |
R-free | 0.23690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1cs8 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.120 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.490 |
High resolution limit [Å] | 1.457 | 3.960 | 1.460 |
Rmerge | 0.084 | 0.062 | 0.386 |
Rmeas | 0.092 | 0.068 | 0.427 |
Rpim | 0.035 | 0.027 | 0.180 |
Number of reflections | 49550 | 2713 | 1641 |
<I/σ(I)> | 14.3 | ||
Completeness [%] | 94.4 | 95.1 | 63.6 |
Redundancy | 6.3 | 6.2 | 4.7 |
CC(1/2) | 0.996 | 0.910 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | PEG 4000, 2-propanol |