6IY9
Crystal structure of aminoglycoside 7"-phoshotransferase-Ia (APH(7")-Ia/HYG) from Streptomyces hygroscopicus complexed with hygromycin B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2018-02-04 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97934 |
Spacegroup name | P 2 3 |
Unit cell lengths | 151.590, 151.590, 151.590 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.900 - 2.400 |
R-factor | 0.226 |
Rwork | 0.225 |
R-free | 0.25100 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | CRANK2 |
Refinement software | PHENIX (1.15.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.460 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.132 | |
Number of reflections | 45592 | 6572 |
<I/σ(I)> | 31.2 | 1.1 |
Completeness [%] | 100.0 | 100 |
Redundancy | 62.7 | 64.6 |
CC(1/2) | 1.000 | 0.500 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.8 | 293 | 0.1 M CHES, pH 8.8, 1.38-1.40 M sodium citrate tribasic |