6IRV
Crystal structure of the human cap-specific adenosine methyltransferase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 70.699, 120.309, 156.831 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.125 - 2.700 |
R-factor | 0.2162 |
Rwork | 0.214 |
R-free | 0.25180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6irx |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.2) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.125 | 48.120 | 2.820 |
High resolution limit [Å] | 2.700 | 9.350 | 2.700 |
Rmerge | 0.110 | 0.040 | 0.751 |
Rmeas | 0.119 | 0.044 | 0.816 |
Rpim | 0.046 | 0.018 | 0.316 |
Number of reflections | 37583 | 1018 | 4535 |
<I/σ(I)> | 10.6 | ||
Completeness [%] | 100.0 | 99.4 | 100 |
Redundancy | 6.7 | 5.8 | 6.6 |
CC(1/2) | 0.998 | 0.998 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 10% PEG 3350, 0.4M sodium nitrate, 0.1M bis-Tris propane |