6ILH
Crystal Structure of human lysyl-tRNA synthetase L350H mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-03 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97949 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 152.180, 152.180, 106.320 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 82.750 - 2.501 |
R-factor | 0.1954 |
Rwork | 0.194 |
R-free | 0.22600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bju |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.2) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 106.320 | 106.320 | 2.570 |
High resolution limit [Å] | 2.500 | 11.180 | 2.500 |
Rmerge | 0.161 | 0.087 | 0.684 |
Rmeas | 0.165 | 0.089 | 0.703 |
Rpim | 0.038 | 0.021 | 0.161 |
Total number of observations | 844999 | ||
Number of reflections | 44348 | 626 | 3595 |
<I/σ(I)> | 14.5 | ||
Completeness [%] | 89.8 | 99.9 | 99.5 |
Redundancy | 19.1 | 17.7 | 18.7 |
CC(1/2) | 0.994 | 0.997 | 0.912 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 13% PEG 2000 MME, 0.4M Ammonium acetate pH8.0 |