6I0O
Structure of human IMP dehydrogenase, isoform 2, bound to GTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-09-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.99987 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 134.119, 134.119, 325.703 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 81.953 - 2.623 |
R-factor | 0.2206 |
Rwork | 0.219 |
R-free | 0.24370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4z87 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.615 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12rc1_2801: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 81.953 | 2.827 |
High resolution limit [Å] | 2.623 | 2.623 |
Rmerge | 0.142 | 1.564 |
Rmeas | 0.155 | 1.689 |
Rpim | 0.060 | 0.635 |
Number of reflections | 44889 | 353 |
<I/σ(I)> | 10.6 | 1.5 |
Completeness [%] | 92.6 | 47 |
Redundancy | 6.5 | 7 |
CC(1/2) | 0.997 | 0.408 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 25% (w/v) PEG-1500 0.1 M Buffer MIB (malonic acid, imadazole, boric acid), pH 9.0 |