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6HOH

Structure of VPS34 LIR motif (S249E) bound to GABARAP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2017-03-12
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.97
Spacegroup nameP 21 3
Unit cell lengths119.502, 119.502, 119.502
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution53.440 - 2.250
R-factor0.2084
Rwork0.206
R-free0.24960
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1gnu
RMSD bond length0.002
RMSD bond angle0.422
Data reduction softwarexia2
Data scaling softwareDIALS
Phasing softwarePHASER
Refinement softwarePHENIX ((1.12_2829: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]53.4432.330
High resolution limit [Å]2.2502.250
Rmerge0.0800.980
Rmeas0.0901.070
Rpim0.0300.440
Number of reflections272192654
<I/σ(I)>10.4
Completeness [%]99.599.21
Redundancy5.85.9
CC(1/2)0.9900.650
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29320% PEG 3350, 200 mM magnesium formate

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