6HOH
Structure of VPS34 LIR motif (S249E) bound to GABARAP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97 |
Spacegroup name | P 21 3 |
Unit cell lengths | 119.502, 119.502, 119.502 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.440 - 2.250 |
R-factor | 0.2084 |
Rwork | 0.206 |
R-free | 0.24960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1gnu |
RMSD bond length | 0.002 |
RMSD bond angle | 0.422 |
Data reduction software | xia2 |
Data scaling software | DIALS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.443 | 2.330 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.080 | 0.980 |
Rmeas | 0.090 | 1.070 |
Rpim | 0.030 | 0.440 |
Number of reflections | 27219 | 2654 |
<I/σ(I)> | 10.4 | |
Completeness [%] | 99.5 | 99.21 |
Redundancy | 5.8 | 5.9 |
CC(1/2) | 0.990 | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% PEG 3350, 200 mM magnesium formate |