6HKS
Crystal structure of the PTPN3 PDZ domain bound to the HPV16 E6 oncoprotein C-terminal peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-21 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.978549599648 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.620, 77.430, 130.030 |
Unit cell angles | 90.00, 90.14, 90.00 |
Refinement procedure
Resolution | 43.343 - 2.194 |
R-factor | 0.196735201568 |
Rwork | 0.194 |
R-free | 0.24680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ez0 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.938 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.620 | 2.230 |
High resolution limit [Å] | 2.190 | 2.190 |
Rmeas | 0.140 | |
Number of reflections | 47024 | |
<I/σ(I)> | 8.17 | 1.11 |
Completeness [%] | 99.1 | 95.7 |
Redundancy | 6.9 | 6.5 |
CC(1/2) | 0.996 | 0.726 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 20% w/v PEG 3350 0.2 mM KI pH 7 |