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6GLC

Structure of phospho-Parkin bound to phospho-ubiquitin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2018-04-22
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.96859
Spacegroup nameP 32 2 1
Unit cell lengths83.931, 83.931, 105.119
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution59.786 - 1.800
R-factor0.1812
Rwork0.180
R-free0.20540
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5n2w 5c1z
RMSD bond length0.007
RMSD bond angle0.863
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]72.6901.840
High resolution limit [Å]1.8001.800
Rmerge0.0650.773
Number of reflections403242339
<I/σ(I)>13.82.4
Completeness [%]100.099.3
Redundancy6.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529112.5% (w/v) PEG 1000, 12.5% (w/v) PEG 3350, 12.5% (v/v) MPD, 0.03 M of each sodium nitrate, disodium hydrogen phosphate, ammonium sulphate, 0.1 M MOPS/HEPES-Na (pH 7.5)

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