6FQY
Plasmodium falciparum 6-phosphogluconate dehydrogenase in its apo form, in complex with its cofactor NADP+ and in complex with its substrate 6-phosphogluconate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-11 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9538 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 99.320, 99.320, 181.750 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.600 - 2.900 |
R-factor | 0.2334 |
Rwork | 0.229 |
R-free | 0.28940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6fqz |
RMSD bond length | 0.005 |
RMSD bond angle | 0.994 |
Data reduction software | XDS (2017) |
Data scaling software | XSCALE (2017) |
Phasing software | PHENIX (dev_2645: ???) |
Refinement software | PHENIX ((dev_2645: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.600 | 3.000 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.170 | |
Rmeas | 0.190 | |
Rpim | 0.085 | |
Number of reflections | 23632 | 2323 |
<I/σ(I)> | 9.69 | |
Completeness [%] | 99.8 | 99.6 |
Redundancy | 5 | 5 |
CC(1/2) | 0.995 | 0.310 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 295 | 25% MME550 and 0.1 M Hepes (4.6) |