6E5G
Crystal structure of human TEAD2-Yap binding domain covalently bound to an allosteric regulator
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2018-05-17 |
Detector | RDI CMOS_8M |
Wavelength(s) | 0.97625 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 123.757, 61.226, 79.839 |
Unit cell angles | 90.00, 116.89, 90.00 |
Refinement procedure
Resolution | 38.890 - 2.430 |
R-factor | 0.2228 |
Rwork | 0.221 |
R-free | 0.26780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5emv |
RMSD bond length | 0.003 |
RMSD bond angle | 0.601 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.170 | 2.520 |
High resolution limit [Å] | 2.430 | 2.430 |
Rmerge | 0.098 | 1.198 |
Rmeas | 0.116 | 1.423 |
Rpim | 0.061 | 0.760 |
Number of reflections | 20219 | 2112 |
<I/σ(I)> | 9.8 | 1 |
Completeness [%] | 99.7 | 100 |
Redundancy | 3.6 | 3.5 |
CC(1/2) | 0.996 | 0.601 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 2.4-2.8 M sodium formate, HEPES, pH 7.2- 7.4 |