6DO3
KLHDC2 ubiquitin ligase in complex with SelK C-end degron
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 8.2.1 |
| Synchrotron site | ALS |
| Beamline | 8.2.1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2016-12-07 |
| Detector | ADSC QUANTUM 315r |
| Wavelength(s) | 1 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 44.816, 87.779, 88.626 |
| Unit cell angles | 90.00, 104.49, 90.00 |
Refinement procedure
| Resolution | 43.391 - 2.165 |
| R-factor | 0.1691 |
| Rwork | 0.166 |
| R-free | 0.22320 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2vpj |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.160 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 2.190 |
| High resolution limit [Å] | 2.150 | 5.830 | 2.150 |
| Rmerge | 0.168 | 0.084 | 0.598 |
| Rmeas | 0.182 | 0.091 | 0.679 |
| Rpim | 0.069 | 0.036 | 0.316 |
| Number of reflections | 35125 | 1817 | 1759 |
| <I/σ(I)> | 6.4 | ||
| Completeness [%] | 99.9 | 99.8 | 99.2 |
| Redundancy | 6.9 | 6.7 | 4.3 |
| CC(1/2) | 0.995 | 0.772 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 298.15 | 0.03M MgCl2*6H2O, 0.03M CaCl2*2H2O, 0.05M Imidazole, 0.05M MES monohydrate, 12.5% v/v MPD, 12.5% PEG1000, 12.5% w/v PEG3350, pH 6.5. |






