6D08
Crystal structure of an engineered bump-hole complex of mutant human chromobox homolog 1 (CBX1) with H3K9bn peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-08-01 |
Detector | RIGAKU RAXIS HTC |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 33.191, 34.052, 35.267 |
Unit cell angles | 76.79, 89.89, 65.10 |
Refinement procedure
Resolution | 23.283 - 2.100 |
R-factor | 0.2293 |
Rwork | 0.227 |
R-free | 0.25240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6d07 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.445 |
Data reduction software | d*TREK |
Data scaling software | d*TREK |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.950 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.047 | 0.142 |
Number of reflections | 7149 | |
<I/σ(I)> | 16.2 | 3.8 |
Completeness [%] | 90.4 | 87.4 |
Redundancy | 3.6 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.1 M citrate, pH 5.0, 3 M ammonium sulfate |