6C5Z
Human UDP-Glucose Dehydrogenase A225L substitutuion with UDP-glucose and NADH bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 77 |
Detector technology | CCD |
Collection date | 2012-04-20 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 93.770, 199.800, 200.820 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.061 - 2.950 |
R-factor | 0.206 |
Rwork | 0.203 |
R-free | 0.25890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2q3e |
RMSD bond length | 0.009 |
RMSD bond angle | 1.007 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.063 | 3.020 |
High resolution limit [Å] | 2.950 | 2.950 |
Rmeas | 0.167 | 1.142 |
Number of reflections | 79604 | 5781 |
<I/σ(I)> | 7.91 | 1.44 |
Completeness [%] | 99.1 | 98.5 |
Redundancy | 4.63 | 4.2 |
CC(1/2) | 0.992 | 0.608 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.8 | 293 | 20% PEG3350, 50 mM dipotassium phosphate, 100 mM sodium glycine |