6BJZ
Crystal Structure of the Fab fragment of humanized 5c8 antibody containing the fluorescent non-canonical amino acid L-(7-hydroxycoumarin-4-yl)ethylglycine at pH 5.5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.00003 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 90.813, 59.911, 73.459 |
Unit cell angles | 90.00, 96.48, 90.00 |
Refinement procedure
Resolution | 72.990 - 1.450 |
R-factor | 0.124 |
Rwork | 0.122 |
R-free | 0.16990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1i9r |
RMSD bond length | 0.014 |
RMSD bond angle | 1.723 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.6) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 72.990 | 50.000 | 1.480 |
High resolution limit [Å] | 1.450 | 3.940 | 1.450 |
Rmerge | 0.080 | 0.037 | 0.732 |
Rmeas | 0.086 | 0.040 | 0.802 |
Rpim | 0.031 | 0.015 | 0.322 |
Number of reflections | 69300 | 3567 | 3453 |
<I/σ(I)> | 8.3 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 7.3 | 7.5 | 6.1 |
CC(1/2) | 0.999 | 0.787 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 3.3 | 298 | 27% PEG 3350, 0.1 M Citric Acid/Sodium Citrate pH 3.3 |