6B92
Crystal Structure of the N-terminal domain of human METTL16 in complex with SAH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-06-25 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0000 |
Spacegroup name | I 41 3 2 |
Unit cell lengths | 190.351, 190.351, 190.351 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.870 - 2.100 |
R-factor | 0.182 |
Rwork | 0.181 |
R-free | 0.21900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2h00 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.676 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.230 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.064 | 1.360 |
Rmeas | 0.066 | 1.410 |
Number of reflections | 34224 | 5267 |
<I/σ(I)> | 28.7 | 2 |
Completeness [%] | 99.3 | 95.9 |
Redundancy | 17.3 | 14.2 |
CC(1/2) | 1.000 | 0.720 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 1.3 M K2HPO4, 45 mM NaH2PO4; drop contained 4 uL of protein solution (27 mg/mL) and 2 uL of reservoir solution; 0.2 uL of 200 mM SAM solution (buffered in 50 mM Hepes pH7.5) was added to the drop with mature crystals. 25% ethylene glycol was used for cryo-protection |