6B4K
Crystal structure of human DDX19B(AMPPNP)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 83.233, 45.364, 127.391 |
Unit cell angles | 90.00, 97.03, 90.00 |
Refinement procedure
Resolution | 42.144 - 2.200 |
R-factor | 0.2086 |
Rwork | 0.207 |
R-free | 0.24840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ews |
RMSD bond length | 0.004 |
RMSD bond angle | 0.623 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.300 |
High resolution limit [Å] | 2.200 | 2.200 |
Rpim | 0.053 | 0.979 |
Number of reflections | 48313 | 4099 |
<I/σ(I)> | 10 | 1.7 |
Completeness [%] | 99.4 | 97.9 |
Redundancy | 6.9 | 6.1 |
CC(1/2) | 0.994 | 0.452 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1 M MIB buffer pH 5.0 (malonate, imidazole, borate), 13 % (w/v) PEG 1500 |