6AJJ
Crystal structure of mycolic acid transporter MmpL3 from Mycobacterium smegmatis complexed with ICA38
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97891 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 87.386, 139.731, 140.713 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.466 - 2.794 |
R-factor | 0.2198 |
Rwork | 0.218 |
R-free | 0.25270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ajf |
RMSD bond length | 0.006 |
RMSD bond angle | 0.918 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.850 |
High resolution limit [Å] | 2.794 | 7.590 | 2.800 |
Rmerge | 0.079 | 0.034 | 0.962 |
Rmeas | 0.082 | 0.036 | 1.000 |
Rpim | 0.023 | 0.010 | 0.271 |
Number of reflections | 43398 | 2364 | 2130 |
<I/σ(I)> | 4.6 | ||
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 13.1 | 11.5 | 13.3 |
CC(1/2) | 0.999 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 10%-20% (v/v) polyethylene glycol monomethyl ether 350 (PEGMME 350), 50 mM ADA (N-(2-Acetamido) iminodiacetic acid) (pH 6.0-7.0), 7.5%-17.5% (v/v) polyethylene glycol 2000 (PEG 2000) |