6Y7T
Engineered conjugation of lysine-specific molecular tweezers with ExoS derived peptidic inhibitor enhance affinity towards target protein 14-3-3 through ditopic binding
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X11 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-14 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97625 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 145.151, 63.119, 167.021 |
Unit cell angles | 90.00, 101.29, 90.00 |
Refinement procedure
Resolution | 59.900 - 2.500 |
R-factor | 0.2215 |
Rwork | 0.219 |
R-free | 0.26754 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4n7g |
RMSD bond length | 0.012 |
RMSD bond angle | 1.702 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.900 | 2.570 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.129 | 0.803 |
Rmeas | 0.151 | 0.954 |
Rpim | 0.058 | 0.373 |
Number of reflections | 51708 | 3691 |
<I/σ(I)> | 8.2 | 1.9 |
Completeness [%] | 99.9 | 98.4 |
Redundancy | 6.6 | 6.4 |
CC(1/2) | 0.996 | 0.796 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | Bis-Tris Propane 0.2M sodium acetate trihydrate 20% PEG1000 10% Glycerol pH 7 Grew at 4 degree Celsius after a few days |