Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6Y6L

Structure the ananain protease from Ananas comosus with a thiomethylated catalytic cysteine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 1
Synchrotron siteSOLEIL
BeamlinePROXIMA 1
Temperature [K]100
Detector technologyPIXEL
Collection date2012-09-23
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.980110
Spacegroup nameP 1 21 1
Unit cell lengths34.482, 57.861, 119.913
Unit cell angles90.00, 93.00, 90.00
Refinement procedure
Resolution39.916 - 1.300
R-factor0.121
Rwork0.120
R-free0.13970
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6yce
Data reduction softwareXDS
Data scaling softwareSCALA (3.3.16)
Phasing softwarePHASER
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]119.74939.9161.370
High resolution limit [Å]1.3004.1101.300
Rmerge0.0480.658
Rmeas0.0870.0520.712
Rpim0.0330.0200.271
Total number of observations76853725464107560
Number of reflections112222379115955
<I/σ(I)>11.225.22.7
Completeness [%]97.199.894.9
Redundancy6.86.76.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6293NaK tartrate 1 M, MES 0.1M at pH6

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon