6XCG
Histone-lysine N-methyltransferase NSD2-PWWP1 with compound UNC6934
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-05-22 |
Detector | RIGAKU SATURN A200 |
Wavelength(s) | 1.54178 |
Spacegroup name | P 1 |
Unit cell lengths | 49.566, 49.978, 51.179 |
Unit cell angles | 91.35, 91.88, 118.27 |
Refinement procedure
Resolution | 25.560 - 1.640 |
R-factor | 0.1789 |
Rwork | 0.178 |
R-free | 0.22200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vc8 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.434 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.670 |
High resolution limit [Å] | 1.640 | 4.450 | 1.640 |
Rmerge | 0.053 | 0.032 | 0.436 |
Rmeas | 0.059 | 0.036 | 0.538 |
Rpim | 0.026 | 0.016 | 0.307 |
Total number of observations | 246572 | ||
Number of reflections | 49043 | 2617 | 2272 |
<I/σ(I)> | 14.6 | ||
Completeness [%] | 92.7 | 98.4 | 86.5 |
Redundancy | 5 | 5.1 | 2.6 |
CC(1/2) | 0.999 | 0.763 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291 | 1.6 M ammonium sulfate, 0.01 M magnesium chloride, 0.1 M HEPES, pH 7.5 |