6VDB
SETD2 in complex with a H3-variant super-substrate peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.370, 76.520, 77.610 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.650 - 2.300 |
R-factor | 0.214 |
Rwork | 0.212 |
R-free | 0.26300 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5jlb |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.650 | 47.650 | 2.380 |
High resolution limit [Å] | 2.300 | 8.900 | 2.300 |
Rmerge | 0.142 | 0.048 | 1.216 |
Rmeas | 0.153 | 0.053 | 1.312 |
Number of reflections | 16627 | 341 | 1612 |
<I/σ(I)> | 10.5 | 33 | 1.7 |
Completeness [%] | 100.0 | ||
Redundancy | 7 | 5.8 | 7.1 |
CC(1/2) | 0.997 | 0.998 | 0.664 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M KSCN, 0.1 M Tris-HCl pH 8.5, and 26% PEG 3350 | |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M KSCN, 0.1 M Tris-HCl pH 8.5, and 26% PEG 3350 |