6V17
Crystal structure of the bromodomain of human BRD7 bound to I-BRD9
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | Cu FINE FOCUS |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-02-05 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.102, 64.749, 96.107 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.588 - 2.050 |
R-factor | 0.2106 |
Rwork | 0.209 |
R-free | 0.24120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ppa |
Data reduction software | DIALS |
Data scaling software | Aimless (0.5.1) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14-3260_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 64.750 | 64.750 | 2.110 |
High resolution limit [Å] | 2.050 | 8.940 | 2.050 |
Rmerge | 0.106 | 0.079 | 0.648 |
Rmeas | 0.115 | 0.087 | 0.723 |
Rpim | 0.044 | 0.036 | 0.315 |
Total number of observations | 107062 | 1354 | 5208 |
Number of reflections | 16528 | 250 | 1078 |
<I/σ(I)> | 7.5 | 14.7 | 2.2 |
Completeness [%] | 98.8 | 99.2 | 86.7 |
Redundancy | 6.5 | 5.4 | 4.8 |
CC(1/2) | 0.995 | 0.990 | 0.568 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M (NH4)2SO4, 0.05 M Bis-tris (pH 6.5), and 30 % Pentaerythritol ethoxylate |