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6U6Z

Human SAMHD1 bound to deoxyribo(TG*TTCA)-oligonucleotide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2018-07-31
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.97910
Spacegroup nameP 1
Unit cell lengths81.610, 94.670, 96.320
Unit cell angles72.90, 70.95, 64.96
Refinement procedure
Resolution68.270 - 2.100
R-factor0.1752
Rwork0.174
R-free0.20580
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6u6x
RMSD bond length0.009
RMSD bond angle0.913
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]68.2702.3002.150
High resolution limit [Å]2.1002.2402.100
Rmerge0.0601.3410.899
Rpim0.0360.5360.534
Number of reflections13184777689840
<I/σ(I)>10.51.31.4
Completeness [%]93.089.593.8
Redundancy3.773.7
CC(1/2)0.9980.6480.726
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2950.26 M sodium malonate, 20% polyethylene glycol 3350, 0.1 M bis-Tris propane pH 8.5
1VAPOR DIFFUSION, SITTING DROP2950.26 M sodium malonate, 20% polyethylene glycol 3350, 0.1 M bis-Tris propane pH 8.5

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PDB entries from 2024-05-15

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