6U6Z
Human SAMHD1 bound to deoxyribo(TG*TTCA)-oligonucleotide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-31 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97910 |
Spacegroup name | P 1 |
Unit cell lengths | 81.610, 94.670, 96.320 |
Unit cell angles | 72.90, 70.95, 64.96 |
Refinement procedure
Resolution | 68.270 - 2.100 |
R-factor | 0.1752 |
Rwork | 0.174 |
R-free | 0.20580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6u6x |
RMSD bond length | 0.009 |
RMSD bond angle | 0.913 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 68.270 | 2.300 | 2.150 |
High resolution limit [Å] | 2.100 | 2.240 | 2.100 |
Rmerge | 0.060 | 1.341 | 0.899 |
Rpim | 0.036 | 0.536 | 0.534 |
Number of reflections | 131847 | 7768 | 9840 |
<I/σ(I)> | 10.5 | 1.3 | 1.4 |
Completeness [%] | 93.0 | 89.5 | 93.8 |
Redundancy | 3.7 | 7 | 3.7 |
CC(1/2) | 0.998 | 0.648 | 0.726 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.26 M sodium malonate, 20% polyethylene glycol 3350, 0.1 M bis-Tris propane pH 8.5 | |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.26 M sodium malonate, 20% polyethylene glycol 3350, 0.1 M bis-Tris propane pH 8.5 |