6TRW
Crystal structure of DPP8 in complex with the EIL peptide (SLRFLFEGQRIADNH)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-13 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.99989 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 163.045, 245.283, 261.439 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.170 - 3.000 |
R-factor | 0.193 |
Rwork | 0.191 |
R-free | 0.22630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6eoo |
RMSD bond length | 0.007 |
RMSD bond angle | 1.133 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.170 | 49.170 | 3.080 |
High resolution limit [Å] | 3.000 | 27.000 | 3.000 |
Rmerge | 0.091 | 0.024 | 1.271 |
Rmeas | 0.097 | 0.026 | 1.351 |
Total number of observations | 880465 | ||
Number of reflections | 104482 | 143 | 7656 |
<I/σ(I)> | 20.41 | 77.69 | 1.99 |
Completeness [%] | 99.9 | 81.2 | 100 |
Redundancy | 8.427 | 6.601 | 8.527 |
CC(1/2) | 0.999 | 1.000 | 0.710 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.75 | 277 | 0.46 M Na citrate pH 6.75 |