6T6F
Crystal structure of human calmodulin-dependent protein kinase 1D (CAMK1D) bound to compound 8 (CS275)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-06 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 109.950, 115.730, 53.960 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.905 - 1.970 |
R-factor | 0.2113 |
Rwork | 0.210 |
R-free | 0.23760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2jc6 |
Data reduction software | XDS |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.910 | 2.020 |
High resolution limit [Å] | 1.970 | 1.970 |
Rmerge | 0.066 | 1.646 |
Number of reflections | 49440 | 3587 |
<I/σ(I)> | 14.7 | 1.3 |
Completeness [%] | 99.7 | 99.4 |
Redundancy | 6.6 | 6.5 |
CC(1/2) | 0.999 | 0.526 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 28% PEG3350 -- 0.1M bis-tris pH 5.5 -- 0.2M ammonium acetate |