6SP7
Crystal Structure of the VIM-2 Acquired Metallo-beta-Lactamase in Complex with Taniborbactam (VNRX-5133)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-10-18 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97949 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 102.910, 79.040, 67.490 |
Unit cell angles | 90.00, 130.50, 90.00 |
Refinement procedure
Resolution | 28.920 - 1.800 |
R-factor | 0.1919 |
Rwork | 0.189 |
R-free | 0.24440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ko3 |
RMSD bond length | 0.018 |
RMSD bond angle | 2.067 |
Data reduction software | MOSFLM (7.1.1) |
Data scaling software | SCALA (3.3.21) |
Phasing software | MOLREP (11.2.08) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 55.609 | 28.925 | 1.900 |
High resolution limit [Å] | 1.800 | 5.690 | 1.800 |
Rmerge | 0.044 | 0.383 | |
Rmeas | 0.114 | 0.068 | 0.546 |
Rpim | 0.064 | 0.038 | 0.308 |
Total number of observations | 110379 | 3606 | 15734 |
Number of reflections | 36880 | 1225 | 5292 |
<I/σ(I)> | 7.4 | 14.9 | 2.2 |
Completeness [%] | 96.9 | 98 | 96 |
Redundancy | 3 | 2.9 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M cacodilate (pH 6.5), 5 mM DTT , 0.2 M Na-acetate, 26% PEG 8000 |