6SJM
Crystal structure of the Retinoic Acid Receptor alpha in complex with compound 24 (JP175)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 63.998, 63.998, 109.596 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.250 - 2.520 |
R-factor | 0.2074 |
Rwork | 0.205 |
R-free | 0.24700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lyq |
RMSD bond length | 0.010 |
RMSD bond angle | 1.168 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.250 | 45.250 | 2.660 |
High resolution limit [Å] | 2.520 | 7.970 | 2.520 |
Rmerge | 0.071 | 0.048 | 0.992 |
Rmeas | 0.080 | 0.052 | 1.054 |
Rpim | 0.029 | 0.020 | 0.371 |
Number of reflections | 8101 | 302 | 1164 |
<I/σ(I)> | 12.7 | ||
Completeness [%] | 99.2 | 98.2 | 100 |
Redundancy | 7.3 | 6.6 | 7.7 |
CC(1/2) | 0.998 | 0.996 | 0.777 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293.15 | 21% PEG 4000, 0.2 M ammonium acetate and 0.1 M tris, pH 7.5 |