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6PT1

Crystal Structure of Class D Beta-lactamase OXA-48 with Meropenem

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
Collection date2017-10-26
DetectorADSC QUANTUM 210r
Wavelength(s)1.0
Spacegroup nameP 1 21 1
Unit cell lengths59.797, 106.512, 95.835
Unit cell angles90.00, 104.66, 90.00
Refinement procedure
Resolution30.994 - 2.000
R-factor0.1881
Rwork0.187
R-free0.23120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3hbr
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER (2.6.0)
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.030
High resolution limit [Å]1.9985.4302.000
Rmerge0.0820.0370.707
Rmeas0.0970.0440.838
Rpim0.0510.0230.446
Number of reflections7800039723855
<I/σ(I)>9
Completeness [%]99.698.999.7
Redundancy3.63.63.4
CC(1/2)0.9970.762
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.2 M Ammonium Acetate, 0.1 M Sodium Acetate pH-4.6, 30%(w/v) PEG-4000

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