6PJJ
Human PRPF4B bound to benzothiophene inhibitor 224
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-16 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9159 |
Spacegroup name | P 65 |
Unit cell lengths | 241.812, 241.812, 50.230 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 79.280 - 2.400 |
R-factor | 0.1928 |
Rwork | 0.190 |
R-free | 0.24020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cnh |
RMSD bond length | 0.005 |
RMSD bond angle | 1.325 |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 120.910 | 2.460 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.328 | 1.832 |
Rmeas | 0.337 | 1.878 |
Rpim | 0.075 | 0.412 |
Total number of observations | 1335190 | 90043 |
Number of reflections | 66509 | 4383 |
<I/σ(I)> | 8.4 | 2.2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 20.1 | 20.5 |
CC(1/2) | 0.996 | 0.815 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1M HEPES pH 7.5, 0.1M Na/K phosphate, 15% PEG smear high, 10% etylene glycol |