6ONJ
Crystal structure of PPARgamma ligand binding domain in complex with TRAP220 peptide and agonist rosiglitazone
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 200 |
Detector technology | PIXEL |
Collection date | 2019-02-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 54.386, 85.574, 121.629 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.640 - 2.300 |
R-factor | 0.218 |
Rwork | 0.212 |
R-free | 0.27300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1prg |
Data reduction software | DIALS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.640 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.023 | 0.157 |
Number of reflections | 12926 | 1260 |
<I/σ(I)> | 16.54 | 4.37 |
Completeness [%] | 99.6 | 99.8 |
Redundancy | 2 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.2M Sodium acetate trihydrate 0.1M Tris, pH 8.5 30% w/v, PEG 4000 |