6O4D
Structure of ALDH7A1 mutant W175A complexed with L-pipecolic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2017-04-03 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 155.775, 161.975, 159.044 |
Unit cell angles | 90.00, 94.88, 90.00 |
Refinement procedure
Resolution | 57.962 - 1.880 |
R-factor | 0.1744 |
Rwork | 0.172 |
R-free | 0.21520 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 4zul |
RMSD bond length | 0.006 |
RMSD bond angle | 0.767 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.900 | 62.900 | 1.910 |
High resolution limit [Å] | 1.880 | 10.300 | 1.880 |
Rmerge | 0.063 | 0.022 | 0.590 |
Rmeas | 0.074 | 0.026 | 0.712 |
Rpim | 0.039 | 0.014 | 0.393 |
Total number of observations | 1137039 | 6919 | 50415 |
Number of reflections | 316551 | 1914 | 15697 |
<I/σ(I)> | 14 | 37.5 | 1.8 |
Completeness [%] | 99.6 | 95.7 | 99.8 |
Redundancy | 3.6 | 3.6 | 3.2 |
CC(1/2) | 0.998 | 0.999 | 0.733 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.2 | 293 | 0.1 M MgCl2, 0.1 M Tris pH 7.2, 0.1 M sodium acetate trihydrate, 20% (w/v) PEG 4000 |