6NMB
Tranexamic Acid is an Active Site Inhibitor of Urokinase Plasminogen Activator
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2017-09-27 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 73.043, 65.446, 111.136 |
Unit cell angles | 90.00, 97.42, 90.00 |
Refinement procedure
Resolution | 48.560 - 2.300 |
R-factor | 0.2233 |
Rwork | 0.221 |
R-free | 0.27120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vnt |
RMSD bond length | 0.017 |
RMSD bond angle | 1.845 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.560 | 2.420 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmeas | 0.226 | 0.971 |
Rpim | 0.087 | 0.439 |
Number of reflections | 42244 | |
<I/σ(I)> | 5.3 | |
Completeness [%] | 90.0 | |
Redundancy | 6.6 | |
CC(1/2) | 0.995 | 0.817 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.03 M sodium nitrate, 0.03 M sodium phosphate, 0.03 M ammonium sulfate, 0.1 M Tris bicine, 25% v/v PEG500, 10% v/v PEG20000 |