6M6D
Structure of HPPD complexed with a synthesized inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-10-20 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 76.568, 83.736, 61.960 |
Unit cell angles | 90.00, 100.47, 90.00 |
Refinement procedure
Resolution | 38.702 - 1.842 |
R-factor | 0.1847 |
Rwork | 0.183 |
R-free | 0.21530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ywk |
RMSD bond length | 0.007 |
RMSD bond angle | 0.903 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.880 |
High resolution limit [Å] | 1.842 | 1.842 |
Rmerge | 0.128 | 0.488 |
Number of reflections | 32007 | 1606 |
<I/σ(I)> | 8.62 | 2.73 |
Completeness [%] | 97.0 | |
Redundancy | 3.3 | |
CC(1/2) | 0.989 | 0.745 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1M Tris/Bicine pH 8.5, 15% (v/v) MPD, 15% (w/v) PEG 1000, 15% (w/v) PEG 3350, 0.03M NaBr, 0.03M NaF, 0.03M NaI |