6L96
Structure of PPARalpha-LBD/pemafibrate/SRC1 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-10 |
Detector | DECTRIS PILATUS3 S 2M |
Wavelength(s) | 1.00 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 82.736, 82.736, 177.521 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.670 - 3.200 |
R-factor | 0.19025 |
Rwork | 0.187 |
R-free | 0.25272 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5hyk |
RMSD bond length | 0.007 |
RMSD bond angle | 1.642 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.700 | 3.260 |
High resolution limit [Å] | 3.200 | 3.200 |
Rmerge | 0.080 | 0.678 |
Number of reflections | 22457 | 1107 |
<I/σ(I)> | 20.8 | 1.5 |
Completeness [%] | 100.0 | 100 |
Redundancy | 5.9 | 6.1 |
CC(1/2) | 0.996 | 0.800 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 1.2 M ammonium sulfate and 0.1M bis-tris-HCl (pH 6.5) |