6KJZ
Crystal structure of PDE4D catalytic domain complexed with compound 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | OXFORD DIFFRACTION NOVA |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-11-18 |
Detector | OXFORD ONYX CCD |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.311, 79.700, 163.316 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.148 - 2.200 |
R-factor | 0.203477361054 |
Rwork | 0.201 |
R-free | 0.24625 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5wqa |
RMSD bond length | 0.008 |
RMSD bond angle | 0.871 |
Data reduction software | CrysalisPro (38.41) |
Data scaling software | CrysalisPro (38.41) |
Phasing software | PHASER (1.10) |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 22.150 | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.052 | 0.347 |
Number of reflections | 40198 | 4050 |
<I/σ(I)> | 23.4 | 2.16 |
Completeness [%] | 99.0 | 98.3 |
Redundancy | 3.6 | 2.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.4 | 277 | 0.1 M HEPES (pH 7.4), 0.1 M MgCl2, 15-20% PE G3350, 10% isopropanol, 25% ethylene glycol |