6KDP
Crystal structure of human DNMT3B-DNMT3L complex (II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL15A1 |
Synchrotron site | NSRRC |
Beamline | BL15A1 |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2018-10-19 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 1 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 72.105, 234.066, 230.951 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.804 - 2.930 |
R-factor | 0.2071 |
Rwork | 0.205 |
R-free | 0.24400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yx2 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 3.040 |
High resolution limit [Å] | 2.930 | 2.930 |
Rmerge | 0.100 | 0.538 |
Number of reflections | 32961 | 1981 |
<I/σ(I)> | 19.19 | |
Completeness [%] | 98.0 | |
Redundancy | 5.9 | |
CC(1/2) | 0.962 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 278 | 2.7 M Sodium formate |