6KB6
X-ray structure of human PPARalpha ligand binding domain-tetradecylthioacetic acid (TTA) co-crystals obtained by delipidation and cross-seeding
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
| Synchrotron site | Photon Factory |
| Beamline | AR-NE3A |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-12-11 |
| Detector | DECTRIS PILATUS 2M-F |
| Wavelength(s) | 1.00000 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 44.755, 61.391, 52.941 |
| Unit cell angles | 90.00, 106.47, 90.00 |
Refinement procedure
| Resolution | 32.687 - 1.431 |
| R-factor | 0.1736 |
| Rwork | 0.173 |
| R-free | 0.19300 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3vi8 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.21) |
| Phasing software | PHASER (2.7.16) |
| Refinement software | PHENIX (1.11.1-2575-000) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.920 | 42.920 | 1.460 |
| High resolution limit [Å] | 1.430 | 7.700 | 1.430 |
| Rmerge | 0.038 | 0.023 | 0.340 |
| Rmeas | 0.045 | 0.028 | 0.405 |
| Rpim | 0.024 | 0.015 | 0.217 |
| Number of reflections | 50287 | 337 | 2397 |
| <I/σ(I)> | 17.9 | 50 | 3.4 |
| Completeness [%] | 99.1 | 97.3 | 93 |
| Redundancy | 3.4 | 3.3 | 3.3 |
| CC(1/2) | 0.999 | 0.999 | 0.895 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION | 277 | 0.1 M HEPES (pH 7.0), 25 %(w/v) PEG3350 |






